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Genetic Association Interaction Network 0.0.1 Alpha



 

Genetic Association Interaction Network 0.0.1 Alpha

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Genetic Association Interaction Network 0.0.1 Alpha Ranking & Summary

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User Review: 0 (0 times)
File size: 754 KB
Platform: Windows All
License: GPL
Price: FREE
Downloads: 17
Date added: 2011-04-02
Publisher: Brett McKinney

Genetic Association Interaction Network 0.0.1 Alpha description

Genetic Association Interaction Network 0.0.1 Alpha comes as a simple and dependable tool which is based on interaction information between three attributes; in this case, between two single nucleotide polymporphisms (SNPs) and a class or phenotype attribute.

Interaction information is the gain in phenotype information obtained by considering SNP A and SNP B jointly beyond the phenotype information that would be gained by considering SNPs A and B independently.

Thus, each edge in a GAIN represents the increase in information about the phenotype achieved by considering the two SNPs jointly compared to the expected increase in information with the assumption of independence between the SNPs. They emphasize that a connection between SNPs in a GAIN is specific to the given phenotype because it measures the correlation between two SNPs that influences association with the phenotype. The network can be exported to Cytoscape or visualized interactively within the GAIN tool. 

Requirements:
  • Java

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