PeppeR 1.12.07 Ranking & Summary
PeppeR 1.12.07 description
PeppeR 1.12.07 offers users with an effective yet beneficial ava-based, graphical DAS client which is designed for visualization of hybrid models (3D-EM volume maps plus atomic resolution structures from fitting experiments) together with their annotations. PeppeR implements DASx3DEM, an extension of the DAS protocol that allows sharing annotations about hybrid models. This annotation system has been built on the basis of the EMDB, which stores Three-dimensional Electron Microscopy (3D-EM) volumes, PDB, which houses atomic coordinates, and UniProt (for protein sequences) databases. In this way, annotations for sequences, atomic coordinates, and 3D-EM volumes are collected and displayed through a single graphical visualization client. Thus, users have an integrated view of all the annotations together with the whole macromolecule (3D-EM map coming from EMDB), the atomic resolution structures fitted into it (coordinates coming from PDB) and the sequences corresponding to each of the structures (from UniProt).
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