Unipro UGENE 1.3.3

Unipro UGENE 1.3.3 is a useful tool which is designed to integrate most of the important molecular biology tools within a single graphical environment. UGENE runs on Linux, Windows and MacOS platforms and is able to utilize resources of modern multi-core and GPU hardware.

User Interface:

1. Visual and interactive process of analysis
2. Workflow designer to draw computational workflows
3. High-quality, publication ready visualization
4. Runs on Windows, Linux, Solaris, MacOS in native mode

Design and extensibilty:

1. A script language to create new tasks and GUI elements
2. Support for pluggable modules
3. Active computational tasks do not block user interface

Hardware scalability:

1. Supports most of modern hardware: all modern 32/64-bit Intel and AMD processors,  IBM Cell and Sun Sparc processors
   
   
2. Customizable algorithms libraries: for multicore computers, GPU blocks high performance clusters and grid networks

Availability and cooperation:

1. Free and open source
2. Can be used for education in schools and universities
3. Contact us to discuss public or private extensions
   

Major Features:

1. View and analysis of annotated DNA or protein sequences
2. Huge files support, native support of gzipped documents
3. Chromatograms visualization
4. Number of DNA plots supported
5. Exact local sequence alignment with Smith-Waterman algorithm
6. Search for ORFs
7. Integrated support of search requests to NCBI databases
8. Multiple sequence alignment with port of MUSCLE
9. Easy-to-use search with HMM profiles using adopted HMMER package

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