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Unipro UGENE 1.9.2



 

Unipro UGENE 1.9.2

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Unipro UGENE 1.9.2 Ranking & Summary

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User Review: 0 (0 times)
File size: 15.7MB
Platform: Windows 7, Windows Vista, Windows XP
License: Freeware
Price:
Downloads: 38
Date added: 2011-03-23
Publisher: Unipro, Russia

Unipro UGENE 1.9.2 description

Unipro UGENE 1.9.2 is designed to be an effective and useful cross-platform genome analysis suite that works perfectly on Windows, Mac OS or Linux and requires only a few clicks to install.

Major Features:

  1. Multiple sequence alignment using MUSCLE 3, KAlign, Clustal;
  2. HMM profiles build and search, based on the source of HMMER 2 and HMMER 3;
  3. PCR Primers design using Primer 3;
  4. Cloning in silico capabilities;
  5. Queries to NCBI BLAST and CDD databases;
  6. Protein secondary structure prediction using GOR IV and PSIPRED;
  7. Phylogenetic analysis with Phylip;
  8. Search for restriction enzymes and integration with REBASE;
  9. Extremely fast repeat finder;
  10. DNA reference assembly using Bowtie;
  11. Search for transcription factor binding sites using SITECON;
  12. Protein back translation;
  13. ORF finder;
  14. Complete Smith-Waterman algorithm implementation;
  15. Support for external tools: BLAST+, MAFFT, T-Coffee.

Enhancements:

  • Added auto-annotation high-lighting capabilities
  • Added support of export annottions in GFF format
  • Added support of lauching workflows in separte processes
  • Added multiple optimizations to Genome Aligner
  • Fixed problem with project export
  • Fixed bug with remote requests to NCBI CDD
  • Workflow Designer: added support of FASTA files as queries for Smith-Waterman search
  • Workflow Designer: added export/merge annotations workers
  • Workflow Designer: fixed bug with iterations (append and rename)
  • Added version string and estimated size to uninstall info in Windows "Add/Remove programs"
  • and more minor bugfixes... Check bug tracker for details.¬†

Requirements:

  • Windows¬†

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