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encodes protein sequences

encodes protein sequences

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encodes protein sequences

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Title
Category
Price
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1
Home-Education -> Science
$30.00
Shareware
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Program allows to convert protein sequence from different formats (as Fasta, PDB, Swiss-protein, Swiss-DNA) to another ones (as Fasta, Swiss-protein and Pure amino acid sequence). You should not think about input format at all. You can simply select all input files and program can recognize automatically in one step each file that contains amino acid sequence. Then you can export some or all sequences to the requested format also in one step.
2
Games -> Sports
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Advanced Protein Sequence Converter - Program allows to convert protein sequence from different formats (as Fasta, PDB, Swiss-protein, Swiss-DNA) to another ones (as Fasta, Swiss-protein and Pure amino acid sequence). You should not think about input format at all. You can simply select all input files and program can recognize automatically in one step each file that contains amino acid sequence. Then you can export some or all loaded sequences to the requested format also in one step.
3
Home-Education -> Science
demo
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CLC Protein Workbench provides a wide range of advanced protein analyses, and is based on the same user-friendly and integrated software environment as CLC Free Workbench. This 2 x 2 weeks of fully functional demo includes a vast amount of advanced protein sequence analyses - all analyses are integrated in one single user-friendly and intuitive software application. Some analyses are - Integrated 3D molecular viewer - 2 types of alignments - Phylogenetics - Secondary protein structure prediction - Signal Peptide Prediction (SignalP) - Transmembrane helix prediction (TMHMM) - Motif search (known patterns) - Motif search using regular expressions - Motif search using ProSite patterns - Pattern discovery (unknown patterns) - Web based BLAST - BLAST on local databases - Batch processing of multiple analyses in one work-step - Protein family analysis (PFAM) - Dot plots - Hydrophobicity analyses - Antigenicity analyses - Searches on GenBank, Swiss-Prot, TrEMBL, and PubMed - Log of actions/analyses performed .
4
Graphic-Apps -> CAD
Trial
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CLC Protein Workbench is a science application tool that will allow you to analyse proteins.

CLC Protein Workbench provides a wide range of advanced protein anlyses, and is based on the same user-friendly and integrated software environment as CLC Free Workbench.

This 4 weeks of fully functional demo includes a vast amount of advanced protein sequence analyses - all analyses are integrated in one single user-friendly and intuitive software application.

Here are some key features of "CLC Protein Workbench":

Integrated 3D molecular viewer
2 types of alignments
Phylogenetics
Secondary protein structure prediction
Signal Peptide Prediction (SignalP)
Transmembrane helix prediction (TMHMM)
Motif search (known patterns)
Motif search using regular expressions
Motif search using ProSite patterns
Pattern discovery (unknown patterns)
Web based BLAST
BLAST on local databases
Batch processing of multiple analyses in one work-step
Protein family analysis (PFAM)
Dot plots
Hydrophobicity analyses
Antigenicity analyses
Searches on GenBank, Swiss-Prot, TrEMBL, and PubMed
Log of actions/analyses performed


5
Home-Education -> Mathematics
$1500.00
Commercial
Hide show
CLC Protein Workbench provides a wide range of advanced protein analyses, and is based on the same user-friendly and integrated software environment as CLC Free Workbench. This 2 x 2 weeks of fully functional demo includes a vast amount of advanced protein sequence analyses - all analyses are integrated in one single user-friendly and intuitive software application.

Product features :
  • Integrated 3D molecular viewer
  • 2 types of alignments
  • Phylogenetics
  • Secondary protein structure prediction
  • Signal Peptide Prediction (SignalP)
  • Transmembrane helix prediction (TMHMM)
  • Motif search (known patterns)
  • Motif search using regular expressions
  • Motif search using ProSite patterns
  • Pattern discovery (unknown patterns)
  • Web based BLAST
  • BLAST on local databases
  • Batch processing of multiple analyses in one work-step
  • Protein family analysis (PFAM)
  • Dot plots
  • Hydrophobicity analyses
  • Antigenicity analyses
  • Searches on GenBank, Swiss-Prot, TrEMBL, and PubMed
  • Log of actions/analyses performed
6
Home-Education -> Science
NA
Shareware
Hide show
CLC Protein Workbench creates a software environment enabling users to make a large number of advanced protein sequence analyses, combined with smooth data management, and excellent graphical viewing and output options.

CLC Protein Workbench is available on Windows, Mac OS X, and Linux platforms.

1. You will have easy access to a large number of integrated research tools:
- Integrated 3D molecule view
- Transmembrane helix prediction
- Secondary protein structure predictions
- Identification of protein domains through PFAM domain searches
- Prediction of signal peptides and their cleavage sites
- Sharing of data among researchers
- All actions performed are logged automatically for later review or printing

2. You can make your computer a High-Performance Computing center
- Use CLC Bioinformatics Cell to accelerate HMMER, ClustalW, and Smith-Waterman
- Plug in the Bioinformatics Cube and increase your search speed up to 200 times

3. Your research work will be easy to carry out
- The program is graphically based, intuitive, and user-friendly
- Share data with your colleagues using CLC Database Solution

4. You will have a bioinformatics solution that continuously evolves
- The frequent program updates keep you up to date with the latest scientific developments. Your ideas for future improvements will have top priority.

5. You can customize your workbench
- You have the possibility to customize your workbench through our Software Developer Kit.
If you can think of it, you can make it!

Note: you need to fill in the register form before download.
7
Home-Education -> Health-Nutrition
$19.95
Shareware
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By mastering a few of these long forgotten training procedures youre going to learn about from Protein Supplements Program, you will maximize your genetic potential quickly and easily.You will literally force your muscles to grow! Discover the hidden rules of the supplement industry - Not only are you being ripped off but you are jeopardizing your strength gains and being made a fool of. Id be surprised if you didnt throw away the supplements you have now, after reading this....

Protein Supplements Program v1.5.33 release is Major Update.

8
Home-Education -> Health-Nutrition
$35.95
Shareware
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The system - Muscle Protein Box, that youre about to possess is the no-holds-barred truth. I answer to no big supplement cartel. I work for no magazine mafia. All I want is for you to gain that muscle mass youve always desired. The 9 fundamental laws of human muscle growth - Anchor yourself to these principles and you will never waste another workout in your life....

Muscle Protein Box v1.5.24 release is Major Update.

9
Network-Internet -> File-Sharing
USD595.00
Demo
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With the help of Protein P2P Network you will be able to launch your own legal P2P network

With the help of Protein P2P Network you will be able to launch your own legal P2P network!

Fastream Protein P2P networking technology is a centralized peer-to-peer network for legal content delivery; consisting of four modules: a root server that can be load-balanced as long as a single database is shared, index servers which can have distinct physical MySQL databases, peer node engine service (for uploads) and peer node GUI (for searches and downloads).

The root server handles authentication and load balancing. One or multiple index servers hold database of files and connections. Engine service handles uploads and indexing. Peer node GUI is for the end users to manage uploads, conduct searches and downloads. Also included a Windows Media Player component that -in most cases- can play the download stream.

Features of "Protein P2P Network":

Distribute multimedia files easily and in a cost effective fashion
Utilize centralized-P2P technology legally
Determine the content to be distributed at file granularity
Scalable up to millions of users
Multi-part downloads with intelligent load balancing and resuming
Innovative folder browser component
Smart incremental indexer for efficient CPU & hard drive consumption
Extensive logging for searches and downloads
Built-in Windows Media Player
Peer node compatible with Windows NT4/2000/XP/2003
Central server runs on any PHP 4.xx/5.xx platform on top of any HTTP 1.1 web server
Flexible licensing scheme, lets you run the PHP server on shared hosts at low cost
Designed and optimized for licensed multimedia content delivery to many nodes

10
Network-Internet -> File-Sharing
$595
Demo
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With the help of Protein P2P Network you will be able to launch your own legal P2P network!

Fastream Protein P2P networking technology is a centralized peer-to-peer network for legal content delivery; consisting of four modules: a root server that can be load-balanced as long as a single database is shared, index servers which can have distinct physical MySQL databases, peer node engine service (for uploads) and peer node GUI (for searches and downloads).

The root server handles authentication and load balancing. One or multiple index servers hold database of files and connections. Engine service handles uploads and indexing. Peer node GUI is for the end users to manage uploads, conduct searches and downloads. Also included a Windows Media Player component that -in most cases- can play the download stream.

Here are some key features of "Protein P2P Network":

Distribute multimedia files easily and in a cost effective fashion
Utilize centralized-P2P technology legally
Determine the content to be distributed at file granularity
Scalable up to millions of users
Multi-part downloads with intelligent load balancing and resuming
Innovative folder browser component
Smart incremental indexer for efficient CPU & hard drive consumption
Extensive logging for searches and downloads
Built-in Windows Media Player
Peer node compatible with Windows NT4/2000/XP/2003
Central server runs on any PHP 4.xx/5.xx platform on top of any HTTP 1.1 web server
Flexible licensing scheme, lets you run the PHP server on shared hosts at low cost
Designed and optimized for licensed multimedia content delivery to many nodes
11
Graphic-Apps -> CAD
FREE
Mozilla Public License
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Flicker 0.87.2 Beta is one of the most marvelous program to create bioinformatics tools. Flicker is a program designed to for the development of bioinformatic tools for n-dimensional protein expression data analysis of quantified protein expression across multiple samples from research experiments.

Flicker is an open-source stand-alone computer program for visually comparing 2D gel images. Two-dimensional polyacrylamide gel electrophoresis (2D-PAGE) gels are often difficult to compare because of rubber-sheet distortions.

Major Features:

  1. Flicker allows you to visually compare your gel images against each other or against those found in Internet databases. Many published Internet gels have a subset of spots identified which may make them useful to compare with your gels. Some of these Internet gels are active maps that you can click on a spot to inquire of its identity.You may be able to draw putative conclusions as to the identification of some spots in your gels that visually appear to be the same spots as in reference gels.
  2. The Flicker program integrates these various needs to help you try to make putative spot identifications. See the Quick start examples below for a short list of some of these methods.
  3. Of course Flicker might be useful for comparing other types of images such as 2D-blots, 1D gels, serial microscope sections, time-lapse, microarrays, etc. - any type of image where there are distortions or intensity variation of the images, differing numbers of spots, and other systematic and procedural experimental differences. It can read black and white or color JPEG and GIF images, and black and white TIFF images (some un-banded color TIFF images are available).
  4. The Flicker application is Java program that runs under the MS Windows, MacOS-X, Linux and Solaris operating systems. It is downloaded to and runs on your computer. Flicker has been made open source and was contributed to the Open2Dprot project. Both the executable binary as well as the source code is available.

Enhancements:

  • Corrected documentation.
  • Validated that SWISS-2DPAGE clickable image maps still work.
  • Memory change by editin the LAX file from the Edit Menu since the use of InstallAnywhere installers was previously depricated.

Requirements: Java

12
Graphic-Apps -> Font-Tools
$106.00
Commercial Demo
Hide show

Barcode Studio for Barcode Creation 9.0.3 offers you a useful application which makes barcode creation easy: this barcode maker generates more than 100 barcode symbologies (linear and 2D codes like EAN, EAN128, Code128, 2of5, DataMatrix, QR-Code, GS1, UPC, and more).

With Barcode Studio you quickly create high-quality bar code images for pre-press requirements and desktop publishing applications within minutes. Barcode Studio operates on its own, no additional software and no programming skills are required!

The intuitive user interface and the built-in barcode quality estimator simplifies bar code creation for printer-, screen-, image and clipboard output. Even multiple bar codes are created easily by using the data import or serial number feature.

Major Features:

  1. For Immediate Use: Barcode Studio is an independent application. For generating barcodes no programming skills are required.
  2. All Barcodes: Barcode Studio supports linear, 2D, GS1 and composite symbologies. Example: DataMatrix - barcode generation for mailing purposes used by the German Post (premium address).
  3. Barcodes as Bitmaps: Barcode Studio supports the export of barcode graphic files (BMP, GIF, JPG, TIF, PNG).
  4. Barcodes as Vector Graphic: With Barcode Studio you also create vector graphic formats (EPS, EMF, WMF, PDF, PostScript®).
  5. Quality Preview: With Barcode Studio you create perfect bar codes: The quality preview shows the expected barcode quality during the design and helps to avoid unreadable barcodes.
  6. Versatile: All barcode parameters are freely adjustable (e. g. module width, resolution, ECC level, structured append, code page, ...).
  7. Data Import: The data import function allows the generation of bar codes with data from text or CSV files.
  8. Cross Platform: Barcode Studio is available for Microsoft® Windows, Mac OS X® and Linux®. (UNIX® on request!)
  9. Sequences: With the built-in barcode sequence generator you create barcode series easily.
  10. Command Line: Create bar code bitmaps through command line interface support. Command line parameters for batch operation (silent mode) and integration into third party applications (like Oracle Reports) are supported.
  11. Print Controls: On demand Barcode Studio (V6) generates SAP R/3 print controls. These control sequences control the bar-code printing with TBarCode/SAPwin.

WareSeeker Editor

13
Software-Development -> File-Editors
$45.95
Free to try
Hide show

PageLock Website Copy Protection 7.3.2 is a useful tool that helps you protect your websites HTML code and design from theft using this easy to use program. PageLock encodes HTML in a way that makes it difficult to make unauthorised copies whilst still allowing the resulting webpage to be displayed in a JavaScript compatible Web browser without disruption to its design. PageLock also provides options for preventing text from being selected and the right mouse button being clicked.

Major Features:

  1. Encode HTML websites to help protect against code and design theft.
  2. Block right mouse clicks from displaying menus on your website.
  3. Prevent text from being selected.
  4. Block text being selected using the Web browser's Select All function.
  5. Block Internet Explorer's image toolbar.
  6. Disable dragging and dropping.
  7. Protect an entire folder of webpages at once.
  8. Free software updates

Requirements: 128MB RAM

WareSeeker Editor
14
Audio-Multimedia -> Audio-Codecs
Freeware
Hide show

The AVI Codec Pack is a collection of codecs and filters. Codecs are needed for encoding (and decoding) audio and video.

This package is one of the most complete codec packs available which will allow you to play all major audio and video formats, including DivX, XviD, OGG and many more.

During the installation you get to choose which components to install, and after installation you will be able to play encoded media right away.

15
Home-Shell-Desktop -> Screen-Savers
$14.95
shareware
Hide show
Display your own pictures (including JPEG images) as a screensaver while listening to your favorite sound files, including MP3. Other options include tiling the pictures on your screen, displaying your pictures randomly or in sequence, displaying a picture in a picture, overlapping pictures, fading pictures in and out, sliding pictures, customizing the pictures to any height or width, changing the background colors, turning the sound on or off, displaying pictures full screen, changing the time delay, and password protection. No additional run-time files are needed. All users will also receive a FREE Video Screensaver for viewing AVI or MPG video files. (Runs on all Windows systems)..
16
Home-Education -> Teaching-Tools
Hide show
Visual Paradigm for UML is a professional UML tool that supports complete software lifecycle - object-oriented analysis, object-oriented design, construction, testing and deployment. The UML modeling software helps you build quality applications faster, better and at lower cost. You can draw all types of class diagrams, reverse code, generate code from diagrams and generate documentation. The UML CASE tool also provides abundant UML tutorials, UML interactive demonstrations and UML projects.

Feature List:

+Support UML 2.1

+Business Process diagram

+Mind Mapping

+Requirement Modeling with automatic generate requirement ID (Enhanced)

+Event-driven Process Chain

+Organization Chart

+Navigate between operation and sequence diagram (New)

+Better annotation for sequence diagram (New)

+Callout and Freehand shape

+Nicknamer - create translated copies of model

+Model Transitor

+User Interface Designer

+Java Roundtrip engineering

+Reverse engineering Java, C++, XML, .NET exe/dll, CORBA IDL, Python

+Code Generation - model/diagram to code

+Use Case Details Editor - All-in-one environment for specifying a use cases details including model specification and use case descriptions

+EJB diagram and code generation

+DFD

+ORM support - generate Java objects from database

+Database generation and reverse engineering

+Modeling collaboratively with VP Teamwork Server, CVS, Subversion and Perforce

+Relocate branch with drag and drop (New)

+Report generator

+Automatic diagram layout and reroute connector

+Import/export XMI file

+Support Stored Procedure and Trigger

+Export diagrams to JPG, PNG, SVG, EMF, PDF

+Access code for Floating License (New)

+More...

Other UML modeling Tools/UML Plugins:

Java Platform (Windows/Linux/Mac OS X):

+SDE for Eclipse

+SDE for NetBeans

+SDE for Sun ONE

+SDE for Oracle JDeveloper

+SDE for JBuilder

+SDE for IntelliJ IDEA

+SDE for WebLogic Workshop

Windows Platform:

+SDE for Microsoft Visual Studio

+More SDE...
17
Home-Education -> Teaching-Tools
Hide show
Visual Paradigm for UML is a professional UML tool that supports complete software lifecycle - object-oriented analysis, object-oriented design, construction, testing and deployment. The UML modeling software helps you build quality applications faster, better and at lower cost. You can draw all types of class diagrams, reverse code, generate code from diagrams and generate documentation. The UML CASE tool also provides abundant UML tutorials, UML interactive demonstrations and UML projects.

Feature List:

+Support UML 2.1

+Business Process diagram

+Mind Mapping

+Requirement Modeling with automatic generate requirement ID (Enhanced)

+Event-driven Process Chain

+Organization Chart

+Navigate between operation and sequence diagram (New)

+Better annotation for sequence diagram (New)

+Callout and Freehand shape

+Nicknamer - create translated copies of model

+Model Transitor

+User Interface Designer

+Java Roundtrip engineering

+Reverse engineering Java, C++, XML, .NET exe/dll, CORBA IDL, Python

+Code Generation - model/diagram to code

+Use Case Details Editor - All-in-one environment for specifying a use cases details including model specification and use case descriptions

+EJB diagram and code generation

+DFD

+ORM support - generate Java objects from database

+Database generation and reverse engineering

+Modeling collaboratively with VP Teamwork Server, CVS, Subversion and Perforce

+Relocate branch with drag and drop (New)

+Report generator

+Automatic diagram layout and reroute connector

+Import/export XMI file

+Support Stored Procedure and Trigger

+Export diagrams to JPG, PNG, SVG, EMF, PDF

+Access code for Floating License (New)

+More...

Other UML modeling Tools/UML Plugins:

Java Platform (Windows/Linux/Mac OS X):

+SDE for Eclipse

+SDE for NetBeans

+SDE for Sun ONE

+SDE for Oracle JDeveloper

+SDE for JBuilder

+SDE for IntelliJ IDEA

+SDE for WebLogic Workshop

Windows Platform:

+SDE for Microsoft Visual Studio

+More SDE...
18
Home-Education -> Teaching-Tools
Hide show
Visual Paradigm for UML is a professional UML tool that supports complete software lifecycle - object-oriented analysis, object-oriented design, construction, testing and deployment. The UML modeling software helps you build quality applications faster, better and at lower cost. You can draw all types of class diagrams, reverse code, generate code from diagrams and generate documentation. The UML CASE tool also provides abundant UML tutorials, UML interactive demonstrations and UML projects.

Feature List:

+Support UML 2.1

+Business Process diagram

+Mind Mapping

+Requirement Modeling with automatic generate requirement ID (Enhanced)

+Event-driven Process Chain

+Organization Chart

+Navigate between operation and sequence diagram (New)

+Better annotation for sequence diagram (New)

+Callout and Freehand shape

+Nicknamer - create translated copies of model

+Model Transitor

+User Interface Designer

+Java Roundtrip engineering

+Reverse engineering Java, C++, XML, .NET exe/dll, CORBA IDL, Python

+Code Generation - model/diagram to code

+Use Case Details Editor - All-in-one environment for specifying a use cases details including model specification and use case descriptions

+EJB diagram and code generation

+DFD

+ORM support - generate Java objects from database

+Database generation and reverse engineering

+Modeling collaboratively with VP Teamwork Server, CVS, Subversion and Perforce

+Relocate branch with drag and drop (New)

+Report generator

+Automatic diagram layout and reroute connector

+Import/export XMI file

+Support Stored Procedure and Trigger

+Export diagrams to JPG, PNG, SVG, EMF, PDF

+Access code for Floating License (New)

+More...

Other UML modeling Tools/UML Plugins:

Java Platform (Windows/Linux/Mac OS X):

+SDE for Eclipse

+SDE for NetBeans

+SDE for Sun ONE

+SDE for Oracle JDeveloper

+SDE for JBuilder

+SDE for IntelliJ IDEA

+SDE for WebLogic Workshop

Windows Platform:

+SDE for Microsoft Visual Studio

+More SDE...
19
Home-Education -> Teaching-Tools
Hide show
Visual Paradigm for UML is a professional UML tool that supports complete software lifecycle - object-oriented analysis, object-oriented design, construction, testing and deployment. The UML modeling software helps you build quality applications faster, better and at lower cost. You can draw all types of class diagrams, reverse code, generate code from diagrams and generate documentation. The UML CASE tool also provides abundant UML tutorials, UML interactive demonstrations and UML projects.

Feature List:

+Support UML 2.1

+Business Process diagram

+Mind Mapping

+Requirement Modeling with automatic generate requirement ID (Enhanced)

+Event-driven Process Chain

+Organization Chart

+Navigate between operation and sequence diagram (New)

+Better annotation for sequence diagram (New)

+Callout and Freehand shape

+Nicknamer - create translated copies of model

+Model Transitor

+User Interface Designer

+Java Roundtrip engineering

+Reverse engineering Java, C++, XML, .NET exe/dll, CORBA IDL, Python

+Code Generation - model/diagram to code

+Use Case Details Editor - All-in-one environment for specifying a use cases details including model specification and use case descriptions

+EJB diagram and code generation

+DFD

+ORM support - generate Java objects from database

+Database generation and reverse engineering

+Modeling collaboratively with VP Teamwork Server, CVS, Subversion and Perforce

+Relocate branch with drag and drop (New)

+Report generator

+Automatic diagram layout and reroute connector

+Import/export XMI file

+Support Stored Procedure and Trigger

+Export diagrams to JPG, PNG, SVG, EMF, PDF

+Access code for Floating License (New)

+More...

Other UML modeling Tools/UML Plugins:

Java Platform (Windows/Linux/Mac OS X):

+SDE for Eclipse

+SDE for NetBeans

+SDE for Sun ONE

+SDE for Oracle JDeveloper

+SDE for JBuilder

+SDE for IntelliJ IDEA

+SDE for WebLogic Workshop

Windows Platform:

+SDE for Microsoft Visual Studio

+More SDE...
20
Home-Education -> Teaching-Tools
Hide show
Visual Paradigm for UML is a professional UML tool that supports complete software lifecycle - object-oriented analysis, object-oriented design, construction, testing and deployment. The UML modeling software helps you build quality applications faster, better and at lower cost. You can draw all types of class diagrams, reverse code, generate code from diagrams and generate documentation. The UML CASE tool also provides abundant UML tutorials, UML interactive demonstrations and UML projects.

Feature List:

+Support UML 2.1

+Business Process diagram

+Mind Mapping

+Requirement Modeling with automatic generate requirement ID (Enhanced)

+Event-driven Process Chain

+Organization Chart

+Navigate between operation and sequence diagram (New)

+Better annotation for sequence diagram (New)

+Callout and Freehand shape

+Nicknamer - create translated copies of model

+Model Transitor

+User Interface Designer

+Java Roundtrip engineering

+Reverse engineering Java, C++, XML, .NET exe/dll, CORBA IDL, Python

+Code Generation - model/diagram to code

+Use Case Details Editor - All-in-one environment for specifying a use cases details including model specification and use case descriptions

+EJB diagram and code generation

+DFD

+ORM support - generate Java objects from database

+Database generation and reverse engineering

+Modeling collaboratively with VP Teamwork Server, CVS, Subversion and Perforce

+Relocate branch with drag and drop (New)

+Report generator

+Automatic diagram layout and reroute connector

+Import/export XMI file

+Support Stored Procedure and Trigger

+Export diagrams to JPG, PNG, SVG, EMF, PDF

+Access code for Floating License (New)

+More...

Other UML modeling Tools/UML Plugins:

Java Platform (Windows/Linux/Mac OS X):

+SDE for Eclipse

+SDE for NetBeans

+SDE for Sun ONE

+SDE for Oracle JDeveloper

+SDE for JBuilder

+SDE for IntelliJ IDEA

+SDE for WebLogic Workshop

Windows Platform:

+SDE for Microsoft Visual Studio

+More SDE...