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Genes2Networks 1

Genes2Networks 1


Genes2Networks brings a simple to use, yet sophisticated software tool used to place lists of mammalian genes in the context of a background mammalian signalome and interactome networks more>>

Genes2Networks 1 brings a simple to use, yet sophisticated software tool used to place lists of mammalian genes in the context of a background mammalian signalome and interactome networks.

The input to the program is a list of human Entrez Gene gene symbols and background networks in SIG format, while the output includes: all identified interactions for the genes/proteins, a subnetwork connecting the genes/proteins using intermediate components that are used to connect the genes, ranking of the specificity of intermediate components to interact with the list of genes/proteins, and a clustering analysis of the genes/proteins from the seed list based on their distance from one another in network space.

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Added: 2007-02-11 License: Freeware Price:
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Gene Construction Kit 2.5

Gene Construction Kit 2.5


The Gene Construction Kit allows graphic manipulation of DNA sequences and sophisticated plasmid drawing options more>>
The Gene Construction Kit allows graphic manipulation of DNA sequences and sophisticated plasmid drawing options.
Gene Construction has an award winning interface design that allows graphic manipulation of DNA sequences in addition to providing sophisticated drawing capabilities for Mac and Windows users.
GCK was named the "Best Plasmid Mapping Software" by the Biotechnology Software and Internet Journal for four straight years.
Main features:
- A powerful productivity tool that no molecular biologist should be without
- Ideal for planning and tracking complex construction projects
- Manipulate actual DNA sequences through a unique and innovative graphical interface
- View construct either as a text sequence or graphically, circular or linear
- Automatically monitor and adjust DNA fragment ends during cutting and pasting
- Define thickness, pattern, shape, direction, and color for each DNA segment
- Search, download, and import GenBank and EMBL files with all GenBank feature table items translated automatically into GCK features.
- Unique Chronography feature tracks the history of any given DNA segment and maintains alternative views
- Name and store comments with each generation (view)
- Cut and paste DNA segments from one construct to another (including segment history)
- View predicted electrophoresis patterns of restriction digests including partial digests
- Show DNA with protein sequence and/or with restriction enzyme or other sites of interest
- Create illustrations containing multiple constructs, gels, sequence listings, free text, legends and other graphics
- File Searching module provides sophisticated database-like capabilities
- Create silent mutations to add or remove a restriction site from a sequence without changing the coding information
- Mark restriction sites using one or more completely editable and expandable enzyme lists
- Auto-arrange restirction site markers
- Find Open Reading Frames using any codon table you specify
- Display the name of any region within the construct window
- Frame segments of DNA in the sequence display. Frames can encompass the site markers, sequence, and/or regions of a construct. You can set the frame color and pattern.
- Use 3-letter or 1-letter amino acid representation for protein sequences
- Annotate sequence listings with custom adornments to highlight sequence features
- Display and maniuplate multiple constructs in the same illustration window
- Add arrows, rectangles, ellipses (filled or empty) and text to illustrations
- Select multiple objects in an illustration window and align them vertically and/or horizontally
- Perfect for making color or black and white posters and figures for slides or papers
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Added: 2007-05-02 License: Freeware Price:
679 downloads
South Park Mad Gene Splicer Theme 1.0

South Park Mad Gene Splicer Theme 1.0


With his mutant monkey friend and a menagerie of strange genetically engineered creatures, no fan of Comedy Centrals TV series South Park can forget the insane Gene Splicer who lives up on a hill in h more>>
With his mutant monkey friend and a menagerie of strange genetically engineered creatures, no fan of Comedy Centrals TV series South Park can forget the insane Gene Splicer who lives up on a hill in his lab. Dont pass up a chance to customize your desktop with the likes of this odd character!
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Added: 1998-09-02 License: Freeware Price:
2156 downloads
Exponents 1.0

Exponents 1.0


math practice for exponents more>> This is a simple program for learning and improving your skill with exponents.<<less
Download (6k)
Added: 2008-11-11 License: Freeware Price:
379 downloads
SigInt 1

SigInt 1


SigInt offers a potential and easy to use software tool used to find and rank mammalian proteins/genes that specifically and significantly interact with a list of proteins/genes in context of a background mammalian signalome and interactome networks. more>>

SigInt 1 offers a potential and easy to use software tool used to find and rank mammalian proteins/genes that specifically and significantly interact with a list of proteins/genes in context of a background mammalian signalome and interactome networks. The inputs to the program are: a seed list of human Entrez Gene gene symbols, a background networks in SIG format, and a name for the output file (Web-page file name with the htm extension).

SigInt outputs a sorted list of genes/proteins that interacts with components from the seed list. These components are sorted by a z-score that measures the specificity of these intermediate components to interact with the genes/proteins from the seed list.

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Added: 2007-02-08 License: Freeware Price:
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Other version of SigInt
SigInt 1.0Mount Sinai School of Medicine Iyengar Lab - SigInt is a command-line software tool that can rank mammalian proteins/genes. SigInt. SigInt is a command-line software utility that can
License:Freeware
Download (341KB)
1001 downloads
Added: 2007-02-09
HLA Assignment 1.0

HLA Assignment 1.0


Microsoft Computational Biology Tools Component more>>
Microsoft Computational Biology Tools Component One way to find epitopes is to do lab studies such as ELISPOT. One problem with this approach is that, if you see a reaction in a patient, you don?t know which of the patient?s HLA genes is responsible for the reaction. This tool takes lab data from a series of patients and determines (probabilistically) which HLA genes are responsible for the reaction.
HLA Assignment Pre-Compiled application is a part of the Microsoft Computational Biology Tools package.
System requirements:
- NET Framework
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Added: 2007-08-27 License: Freeware Price:
788 downloads
eWriter 0.Cg

eWriter 0.Cg


Ewriter has two uses: It s a textwriter extended to be an htmlwriter and, beyond that, now, an xmlwriter more>>
Ewriter comes into flavours - a text writer that was extended to be an html writer and above this its an xml writer.
It?s a writing instrument that has extensions to do the writing that people will be doing in our webbed 21st century.
Looking ahead right now, all those extensions will come out of the extended and extensible systems of punctuation you?ll learn to handle through writing with eWriter.
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Added: 2006-09-02 License: Freeware Price:
1149 downloads
eWriter 0.Co

eWriter 0.Co


21st century eTypewriter more>> 32-bit 21st century eTypewriter (for the writer, not the clerk typist) for use in Windows 95+ and Windows NT.<<less
Download (778k)
Added: 2008-11-11 License: Freeware Price:
351 downloads
BMDExpress 1.1

BMDExpress 1.1


MDExpress is a Java application used to analyze dose-response data from microarray experiments. more>>
MDExpress is a Java application used to analyze dose-response data from microarray experiments.
BMDExpress was designed to perform a stepwise analysis on microarray data that combines bench mark dose (BMD) calculations with gene ontology (GO) classification analysis.
In BMDExpress the combination provides dose estimates at which different cellular processes are altered at a defined increase in response based on expression levels in the untreated controls.
Currently, only data from select Affymetrix microarrays are supported by BMDExpress (see below). In the future, additional platforms or arrays could be added if there will be sufficient demand
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Added: 2007-03-22 License: Freeware Price:
954 downloads
BioGoggles 1.0.0

BioGoggles 1.0.0


Multivariate statistics and visualization of gene and protein expression data more>> BioGoggles provides easy analysis and visualization of your multivariate data. Automatic calculation of p-values and ROC areas for each variable. Scatter, Box-Whisker and ROC plots. Principal Component Analysis and 3D plot<<less
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Added: 2007-06-01 License: Freeware Price:
883 downloads
Triple Crown 1.1

Triple Crown 1.1


FREE multiplayer online game in which players compete to buy, sell, race and breed thoroughbreds. Downloadable database lets you examine all horses offline with pedigrees, gene analysis and genealogy. more>>
FREE multiplayer online game in which players compete to buy, sell, race and breed thoroughbreds. Downloadable database lets you examine all horses offline with pedigrees, gene analysis and genealogy.
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Added: 2008-09-07 License: Freeware Price:
411 downloads
Women Weight Training 1.0

Women Weight Training 1.0


Women weight training and fitness program to achieve a finely shaped shaped body and great abdominals. This weight training program is specificall tailored for women to get the best results without any fad diets, starving,or super genes required. more>> <<less
Download (468.06KB)
Added: 2008-12-25 License: Freeware Price: $0.00
251 downloads
Phone dialer 1.5

Phone dialer 1.5


Phone dialer is described as an easy-to-use and beneficial Vista Gadget which allows you to dial phones from the desktop and create a phone conference. more>>

Phone dialer 1.5 is described as an easy-to-use and beneficial Vista Gadget which allows you to dial phones from the desktop and create a phone conference. Phone dialer is a gadget that will allow you to dial regular phones from your desktop and connect them into a phone conference.

Requirements: Windows Vista


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Added: 2007-12-18 License: Freeware Price: $0.00
downloads
dynamite_cowbell 1.0

dynamite_cowbell 1.0


dynamite cowbell brings you more cowbell than even Gene Frenkle can deliver. more>> dynamite cowbell brings you more cowbell than even Gene Frenkle can deliver.
Features:
- 6 cowbells mapped to midi keys
- 5 velocity layers
- close and room mic levels
- damping control
- 5 bonus digibells
- 1 cow
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Added: 2008-07-18 License: Freeware Price: Free
463 downloads
My Identity Protector 3.0.3

My Identity Protector 3.0.3


Identity Theft Protection and Data Loss Prevention more>> My ID Protector protects you from Identity Theft and data loss by locating sensitive personal data at rest on your computer before it can be stolen. My ID Protector self-discovers anything on your computer that looks potentially like your personal data. In addition to simply discovering your personal regulated private information, My ID Protector has fully integrated tools allowing you to: Encrypt Files, Delete Files, Examine file data, and Search for similar results. My ID Protector makes examining data on your computer a snap with a number of options for viewing results, including: Integrated hierarchal Windows Explorer-like tree viewer, Adobe Acrobat .pdf report generation, and several Data export and copy options. Scanning your computer for personal information is as simple as clicking the "Run Scan" button. For people who desire more control over scanning for personal sensitive and regulated information, you can configure options all the way down to CPU and memory usage! Algorithms used to map the Human Genome to discover "unknown and interesting" genes are used by Proventsures Data Loss Prevention technologies to discover "unknown and interesting" types of information during audits. These algorithms operate more accurately and efficiently than other technologies scanning for sensitive information. Proventsure dynamically determines how to decode files through a series of innovative statistical and structural analysis techniques. This enables the analysis engine to "learn" decoding techniques for many proprietary and unknown formats.<<less
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Added: 2008-08-22 License: Freeware Price: Free
489 downloads
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